FabI Inhibitor Design
The increasing prevalence of antibiotic resistance of certain bacteria is well–documented.  To develop new antibiotics we are targeting of the fatty acid biosynthesis pathway, as this pathways is essential for bacterial growth and it represents validated targets for antibiotic development for several reasons.  Fatty acids are synthesized by mammals (FAS I) and bacteria (FAS II) via substantially different biosynthetic mechanisms, thus providing the possibility of bacteria–specific drug targeting.  FAS I involves a single multifunctional enzyme–acyl carrier protein (ACP) complex, whereas FAS II utilizes several small monofunctional enzymes that operate in conjunction with ACP–associated substrates.  Recent studies have revealed that the genes responsible for FAS II are essential in Bacillus subtilis, a close relative of B. anthracis.

Enoyl–ACP reductase or FabI, the product of the fabI gene, is an NADH–dependent, key enzyme in the FAS II path that catalyzes the final and rate–determining step of chain elongation.  Considerable research over the past few years has shown that enoyl–ACP reductase in a number of pathogens is efficiently inhibited by antibacterial agents including isoniazid, diazaboranes, triclosan, and several other small molecule inhibitors. API-1252, a recently developed FabI inhibitor shows excellent in vitro activity against clinical isolates of Staphylococcus epidermidis and Staphylococcus aureus. Another novel FabI inhibitor, CG400462, was recently reported to show efficacy against Staphylococcus aureus infected mice. These studies clearly indicate that inhibition of enoyl–ACP reductase is a viable approach to develop new antibacterials with novel modes of action.

Recent papers from our lab on FabI inhibitor development:


S. Tipparaju, D.C. Mulhearn, S. Yang, G. Klein, Andrew D. Mesecar, M.E. Johnson and A. Kozikowski (2008) “Design and synthesis of novel aryl ether inhibitors of the Bacillus anthracis Enoyl-ACP Reductase,” ChemMedChem, 3, 1260-1268.
(Abstract)

S. K. Tipparaju, S. Joyasawal, S. Forrester, D.C. Mulhearn, S. Pegan, M.E. Johnson, A.D. Mesecar and A.P. Kozikowski (2008), “Design and Synthesis of 2-Pyridones as Novel Inhibitors of the Bacillus Anthracis Enoyl–ACP Reductase,” Bioorganic & Medicinal Chemistry Letters, 18(12), 3565-3569.
(Abstract)